ArrayAssist® Expression Software, powered by avadis™, is easy to use, while still offering a full spectrum of advanced analytical features such as new statistical tests (multi-way ANOVA and non-parametric statistical tests), data mining tools (classifiers for machine learning-based prediction) and sophisticated, dynamic, interactive visualization options.
For advanced users, a new scripting engine is featured in all products of the ArrayAssist line. The engine allows scripting of complex functions and user-defined workflows and is fully integrated with external programs such as the R statistical software. The scripting capabilities enable creation and deployment of automated workflows significantly extending ArrayAssist expression software functionality, ease of use, and its usefulness for the research team. ArrayAssist Expression software is Mac, Windows and Linux compatible and is integrated with the PathwayArchitect™ software, allowing seamless data transfer between the products.
100 manually curated pathways*
Large biological interaction database with over two million biological facts*
Guided workflows for ease of use
Relevance Interaction Network algorithm helps find most important interactions
Support for Mac® OS X, Linux® and Windows®
Stratagene’s PathwayArchitect® software, powered by avadis™, is the new standard in pathway analysis. With its easy to use biology-focused workflow and a vast database of over two million biological interactions, PathwayArchitect® software is designed with the life scientist in mind.
The PathwayArchitect® software also features a new method to explore biological interactions—the Relevance Interaction Network. Relevance Interaction Network analysis begins with a protein list and identifies the network of proteins and small molecules, which are most statistically related to the biology of the protein list. This algorithm makes it possible to easily identify binding complexes, transcriptional regulation networks, and even small molecules that regulate the biology of a group of proteins.
Getting Started Using the PathwayArchitect Software [Streaming Web Video]
PathwayArchitect® integrates powerful data management tools with analysis options that enable scientists to determine both the statistical and biological significance of microarray data, all in a single convenient system. Support for common platforms (Affymetrix, Illumina, etc.) as well as custom arrays, makes PathwayArchitect® the most effective and accessible microarray data analysis system available today.
Seamless interaction between all analysis applications
Interactivity with databases on the Internet
Automation and customization through powerful script language